GCP Product Catalogue

The Product Catalogue is an evolving  compilation of  a diverse array of  products derived from tangible outputs of projects supported in whole or in part by the CGIAR Generation Challenge Programme.  As projects mature, more products are added. Products are listed under the specific project crop or ‘Global’.   Under each crop, you will find diverse types of products, such as  germplasm, markers, genomics resources and informatics applications.  ‘Global’ includes products  applicable to several or all crops and generally includes informatics tools and learning materials. We consider all catalogued products as useful. However, our user base is highly varied and includes upstream as well as downstream plant scientists. Not all products will be of direct interest to breeders. Consequently, a BUL (Breeding Use Level) rating has been provided to indicate the direct usefulness of products to breeders:

Breeding Use Levels
BULDescription
1 Ready to use for breeding
 (I.e. predictive markers, germplasm of acceptable agronomic type containing a well-defined and characterized trait, and etc.).
2 Qualified use for breeding
 (i.e germplasm in which trait genetics have not been well defined or markers that may be informative but not necessarily predictive).
3 Indirectly useful for breeding
 (i.e. genomic resources from which downstream products for breeding are developed and many informatics applications).
4 Not developed for breeding, per se
 (i.e. miscellaneous information as socio-economic reports).


How to use this table:

  • With the exception of BUL, you can sort by column by clicking on the title of each column
  • You can search for any term, word, or keyword by typing it into the search box above the table
  • You can export data by clicking on the CSV link above the table

CSV
Crop/Area Product Type Description Access BUL
Maize QTL maps for maize diseases Genomic Resources QTL maps for maize diseases in a number of segregating populations Contact: Rebecca Nelson, Cornell University, USA
jmn99@cornell.edu

Also refer to:
1) Balint-Kurti, P.J., Krakowsky, M. D., Jines, M. P., Robertson, L. A., Molnár, T. L., Goodman M. M. and Hollan (read more)
3
Maize Markers for aluminum tolerance in Maize Informative Markers Markers for novel maize Al tolerance QTL, ZmMATE1, with major effects on tolerance populations and to use for breeding for improved Al tolerance. Contact Claudia Guimares, Embrapa (Maize and Sorghum), Brazil

claudia@cnpms.embrapa.br.
1
Maize Getting the focus right: a GCP socio-economic study to determine small-holder production constraints Publication This study organized the systematic tapping of the tacit knowledge of experienced research and development practitioners to provide valuable information on the relative importance of different product (read more) Viewable and downloadable from Generation Challenge Program Website (www.generationcp.org)

http://www.generationcp.org/gcp-impact/gcp-socioeconomic-studies/targeting-and-impact-analysis-of-gcp-tech (read more)
4
Maize Aluminum tolerant maize and sorghum lines Germplasm Genotypes of maize and sorghum identified with superior performance on acid soils L. Kochian, USDA/ARS, Cornell University, Ithaca, NY USA

lvk1@cornell.edu
2
Maize Markers for drought tolerance Informative Markers SNP molecular markers for transferring drought tolerance into elite Asian adapted inbreds Contact Bindiganavile Vivek, CIMMYT, Hyderabad, India at b.vivek@cgiar.org 1
Maize Drought tolerant inbreds Germplasm Two highly drought tolerant CIMMYT inbreds adapted for breeding use in Asia Contact Bindiganavile Vivek, CIMMYT, Hyderabad, India at b.vivek@cgiar.org 1
Maize QTL for leaf growth in maize, wheat and rice Genomic Resources QTLs of the P1P2 population for leaf growth and ASI, QTLs of leaf length in maize, wheat and rice for well watered and water deficient plants, Models of silk and leaf growth for maize, Elements of mod (read more) Sadok W, Naudin Ph, Boussuge B, Muller B, Welcker C, Tardieu F (2007) Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating (read more) 3
Maize Validated SSR marker kit for diversity analysis of maize germplasm collections Genomic Resources Reference kit of 20 SSRs with primer sequence list used to define the Maize Germplasm Reference Set composed of a core set of 234 accessions representing the genetic diversity of the entirety of the (read more) Available from Generation Challenge Program, CIMMYT, Texcoco, Mexico
info@generationcp.org
2
Maize A low-cost QPM detection assay for maize Protocol One low cost, low tech technology – dot blot detection assay – developed with reduced cost for QPM in maize. Breeders have relied on seed phenotyping for QPM selection and some errors occur. The (read more) Contact: Susanne Dreisigacker, CIMMYT, Mexico

s.dreisigacker@cgiar.org
1
Maize SNP Markers for Downy Mildew resistance in maize Informative Markers SNP markers for downy mildew resistance associated with selected candidate genes obtained from coding regions or flanking sequence based on chromosomal location around SSR markers derived from associ (read more) Contact: Drr. Chalermpol Phumichai, Kasetsart University, Bangkok, Thailand

chalermpol.ph@gmail.com
2
Maize MTPEH200803 and MTPEH200804, high-yielding disease resistant hybrids developed in Kenya. Germplasm Both MTPEH200803 and MTPEH200804 are high yielding , Grey Leaf Spot and Maize Streak Virus reistant, and short stature. Both have performed well in the dry coastal lowlands; however, the former is ad (read more) Contact James Gethi, Kenyan Agricultural Research Institute

jgethi@wananchi.com
1
Maize A SNP array for drought candidate genes in maize. Genomic Resources 1536 SNP array for Drought Candidate Genes. GCP Central Registry http://gcpcr.grinfo.net/

http://www.panzea.org/db/gateway?file_id=2007_candidate_snp

Contact: Sarah Hearne, CIMMYT, Mexico
s.hearne@cgiar.org
2
Maize Markers for maize landrace and teosinte populations. Genomic Resources SSR data for 200 maize landraces and 20 teosinte populations. GCP Central Registry

http://gcpcr.grinfo.net/

Contact: Sarah Hearne, CIMMYT, Mexico
s.hearne@cgiar.org
3
Maize Mapping populations for Al tolerance and P efficiency from elite Kenyan germplasm Germplasm One population consisting of F2:F3 families from crosses of KML 036 x S 396-16-1 maize inbred lines contrasting for P-efficiency. This population has been genotyped with 466 polymorphic SNPs using the (read more) Contact Samuel Gudu at Moi University, Rongo, Kenya

samgudu2002@yahoo.com
3
Maize Al tolerant and P efficient Kenyan maize lines Germplasm A large number Kenyan maize hybrids were screened for Al tolerance in nutrient solution and Kenyan maize top crosses for P efficiency in the field on low P and high P soils. From these phenotypic s (read more) Contact Samuel Gudu at Moi University, Rongo, Kenya

samgudu2002@yahoo.com
2
Millets Finger millet germplasm reference set germplasm The finger millet reference set is a collection of 300 accessions the genetic composition of which is representative of the genetic diversity of the entire composite genebank collection (ICRISAT). Accessible through the ICRISAT gene bank at http://www.icrisat.org/gene-bank-home.htm

For further information contact H D Upadhyaya, Head, Gene Bank, ICRISAT, India
h.upadhyaya@cgiar.org
2
Millets Validated foxtail millet germplasm reference set Germplasm The foxtail millet reference set is a collection of 203 accessions the genetic composition of which is
representative of the genetic diversity of the entire composite genebank collection (ICRISAT) (read more)
Available at the ICRISAT Gene Bank
http://www.icrisat.org/gene-bank-home.htm

Also contact: H. D. Upadhyaya, Head, Genebank, ICRISAT, India
h.upadhyaya@cgiar.org
2
Musa DNA of the GCP germplasm reference set for Musa Genomic Resources DNA of Musa reference collection (52 accessions= GCP mini-core collection. For each of the accessions, ten extractions, each of three grams of frozen leaves were made with the Matab method (Risterucc (read more) Contact N. Roux, Bioversity, Rome
Up to 5 in vitro plantlets (proliferating or rooted) corresponding to the characterized accessions can be distributed for research purposes. Germplasm is available (read more)
3
Musa DaRT marker array for Musa spp. Genomic Resources An array of DArT markers for Musa discovered by screening a library of several thousand fragments from a genomic representation prepared from a pool of DNA samples that encompass the diversity of the (read more) Available through Diversity Arrays Technology Pty Ltd (DArT P/L)

http://www.diversityarrays.com/
3
Musa SSR markers for the BORLI (Musa) map Genomic Resources 180 SSR markers and 380 DArT markers for the BORLI (Musa) map and 41 BACs completely sequenced. 2 cDNA libraries from PKW leaves and roots produced. 5760 ESTs clones from these libraries sequenced.
(read more)
Direct on-line access:

http://www.musagenomics.org/
http://www.gnpannot.org/fr/content/musaceae-statistics
http://tropgenedb.cirad.fr/tropgene/?module=BANANA
http://esttik.cirad.fr/cgi-bin/publi (read more)
3
Musa A genotyped set of Musa plantlets Germplasm A set of 561 Musa accessions genotyped with 22 SSRs Most of the plantlets corresponding to the genotyped accessions are available at, the International Transit Centre (ITC) hosted by the Katholieke Universiteit Leuven in Belgium.
Contact: Nicholas Rou (read more)
3
Pearl Millet DaRT marker array for pearl millet Genomic Resources An array of DArT markers for pearl millet discovered by screening a library of several thousand fragments from a genomic representation prepared from a pool of DNA samples that encompass the diversity (read more) Available through Diversity Arrays Technology Pty Ltd (DArT P/L)

http://www.diversityarrays.com/
3
Pearl Millet A validated germplasm reference set for pearl millet. Germplasm The pearl millet reference set is a collection of 300 accessions the genetic composition of which is
representative of the genetic diversity of the entire composite genebank collection (ICRISAT).
Available at the ICRISAT Gene Bank
http://www.icrisat.org/gene-bank-home.htm

Also contact: H. D. Upadhyaya, Head, Genebank, ICRISAT, India
h.upadhyaya@cgiar.org
2
Pearl Millet Recombinant inbred line (RIL) sets for pearl millet Germplasm 14 recombinant inbred line sets derived from pearl millet biparental crosses:. F7 seed for eight RIL populations, F6 seed for two RIL populations, F5 seed for three RIL populations and F4 seed for a s (read more) Available by request from the Dryland Cereals Program, ICRISAT, India.
Contact Dr Rakesh Srivastava r.k.srivastava@cgiar.org
2
Pearl Millet Genomic tools for pearl millet Genomic resources 1) A set of nearly 400,000 short-sequence pearl millet ESTs from drought-stressed root and shoot libraries of a pair of elite, genetically diverse pearl millet inbreds developed and mined for EST-SSRs (read more) Data sets available on-line
contigs: http://gcpcr.grinfo.net/files/cr_files/gcpcr_file1016.xlsx
singletons: http://gcpcr.grinfo.net/files/cr_files/gcpcr_file1017.xlsx
SSR markers: http://gcpcr.gri (read more)
3
Pigeonpeas DaRT marker array for pigeon pea Genomic Resources An array of DArT markers for pigeon pea discovered by screening a library of several thousand fragments from a genomic representation prepared from a pool of DNA samples that encompass the diversity o (read more) Available through Diversity Arrays Technology Pty Ltd (DArT P/L)

http://www.diversityarrays.com/
3
Pigeonpeas A Pigeon Pea germplasm reference collection Genomic Resources The Pigeon Pea Reference Set is composed of a core set of 298 accessions representing the genetic diversity of the entirety of the ICRISAT germplasm bank collection. The reference set represents a cri (read more) The International Crops Research Institute for the Semi-Arid Tropics(ICRISAT) Germplasm Bank

Contact: H. Upadhyaya, Head, Genebank, ICRISAT, India
h.upadhyaya@cgiar.org
2
Potatoes A microsatellite kit for the GCP potato reference germplasm set Genomic Resources A Reference kit of 24 SSRs, with sequence list and protocol, germplasm checks, and allele sizes of microsats for those checks Contact Rosario Herrera, International Potato Center (CIP), Lima, Peru

r.herrera@cgiar.org
3
Potatoes DaRT marker array for potato Genomic Resources An array of DArT markers for potato discovered by screening a library of several thousand fragments from a genomic representation prepared from a pool of DNA samples that encompass the diversity of th (read more) Available through Diversity Arrays Technology Pty Ltd (DArT P/L)

http://www.diversityarrays.com/
3
Potatoes Mutagenized potato seeds Germplasm 2,000 potato seeds mutagenized with EMS at LD20 for development of a saturated mutant population of a wild potato species. Contact M. Ghislain, International Potato Center, Lima, Peru

m.ghislain@cgiar.org
3
Potatoes A potato germplasm reference set Germplasm A set of 1027 potato accessions virus free and available for international distribution Contact International Potato Center (CIP), Lima, Peru

www.cippotato.org
2
Potatoes A Potato Germplasm Identification Kit of SSR markers Genomic Resources A set of SSR markers selected for potato genetic identification consisting of the most discriminatory 24 SSR markers covering all chromosomes, 2 per chromosome at a map distance of >10cM. Contact Marc Ghislain, CIP - Nairobi, Kenya
M.Ghislain@cgiar.org
3
Rice Manawthukha, an aromatic rice variety of high quality, improved for bacterial blight resistance Germplasm BC3 selection of aromatic rice variety Manawthukha improved for broad spectrum resistance against bacterial blight isolates from Myanmar and Thailand Contact: Jonaliza L. Siangliw, Rice Gene Discovery Unit, National Center for Genetic Engineering and Biotechnology at
jsiangliw@gmail.com
1
Rice Salinity tolerant Sin Thwe Latt rice variety with submergence tolerance Germplasm BC2F4 selection of salinity tolerant rice variety Sin Thwe Latt improved for submergence tolerance (flash flooding type) Contact: Jonaliza L. Siangliw, Rice Gene Discovery Unit, National Center for Genetic Engineering and Biotechnology at
jsiangliw@gmail.com
1
Rice Dataset of non-host genes for rice varieties IR64 and Nipponbare. Genomic Resources 488 rice IR64 potential non-host genes, 492 rice Nipponbare potential non-host genes. jean-benoit Morel (CIRAD), jbmorel@cirad.fr 3
Rice An array of SNP markers for rice Genomic Resources 250 SNP markers developed for rice: 60 in the Xa7 region on chromosome 6, 60 around Xa13 on chromosome 8, and 130 around the cluster Xa4/Xa22/Xa26 on chromosome 11. Contact Susan McCouch, Cornell University, Ithaca, NY USA

srm4@cornell.edu
3
Rice A SNP data set for rice Genomic Resources Data set of SNP calls at 259,721 unique sites by a model-based approach across 20 varieties for development and discovery. Genome-wide SNP discovery was undertaken by re-sequencing multiple, diverse (read more) Available on-line at:
http://www.oryzasnp.org/
2
Rice Anchor markers for inter-specific crosses with Oryza sativa Genomic Resources A set of 125 SSR anchor markers along the rice genome that provides wide identification of polymorphisms across wild rice species (AA genome). Each anchor is represented by 3 SSR loci each. Orjuela J., A. Garavito, M. Bouniol, J.D. Arbelaez, L. Moreno, J. Kimball, G. Wilson, J.F. Rami, J. Tohme, S.R. McCouch, M. Lorieux. 2010. A Universal Core Genetic Map for rice. Theoretical and Applie (read more) 2
Rice Chinese rice hybrid with drought tolerance. Germplasm A new hybrid cultivar, Liaoyou 5224, derived from the cross between a selected DT IL, C5224 and a CMS line - Liao5216A approved to be released to farmers in the Liaoning province and recommended for m (read more) Contact Z.K. Li, Chinese Academy of Agricultural Sciences (CAAS), Beijing, China

lizhk@caas.net.cn
1
Rice Advanced blast resistant rice lines Germplasm Six Vandana-like lines with added blast resistance from Morobereken ready for testing in upland sites in India (Vandana is a drought tolerant upland variety but deficient in disease resistance in the (read more) Contact Rebecca Nelson, Cornell University, Ithaca, NY USA

rjn7@cornell.edu
1
Rice Bacterial Blight resistant rice accessions Germplasm Rice accessions with relatively high resistance to most known pathogen races of bacterial blight in the Philippines Contact R. Nelson,Cornell University, Ithaca, NY USA

jmn99@cornell.edu
2
Rice Disease and drought resistance rice lines Germplasm Elite progenies from Moroberekan/Vandana cross showing resistance to blast, drought and, in some cases, ShB were identified in India and the Philippines. Contact R. Nelson,Cornell University, Ithaca, NY USA

jmn99@cornell.edu
1
Rice Interspecific rice line (Oryzae sativa x O. glaberrima) resistant to rice blast and drought in Africa Germplasm One interspecific line (SIK400-b-56-1-361-18)with good performance in terms of leaf rolling and reduced leaf burning, ability to recover from drought, and resistance to leaf blast Contact Marie Noelle Ndiondjop, AfricaRice, Benin

M.NDJIONDJOP@cgiar.org
2
Rice Oryzae glaberrima accessions resistant to Bacterial Leaf Blight Germplasm 20 accessions of O. glaberrima found resistant to one of three new African races of Bacterial Leaf Blight Contact Marie Noelle Ndjiondiop, AfricaRice, Benin

M.NDJIONDJOP@cgiar.org
2
Rice Fertile interspecific (Oryzae sativa x O. glaberrima) lines Germplasm Seed of five new fully fertile interspecific (Oryzae sativa x O. glaberrima) lines with desirable agronomic traits available for crossing Contact Marie Noelle Ndjiondjop, AfricaRice, Benin

M.NDJIONDJOP@cgiar.org
1
Rice A CSSL population of Oryza sativa x O. rufipogon Germplasm A Chromosome Segment Substitution Line working population of 60 BC3DH interspecific lines bearing introgressed genome segments from the AA genome of the wild species, Oryza rufipogon Available through IRRI rice genebank, Los Banos, The Philippines
Contact Ruaraidh Sackville Hamilton
r.hamilton@cgiar.org

For additional information contact
M. Lorieux, CIAT/IRD, Cali, Colombia
(read more)
2
Rice A CSSL population of Oryza sativa x O. glumaepatula Germplasm A Chromosome Segment Substitution Line working population of about 60 interspecific lines bearing introgressed genome segments from the AA genome of the wild species, Oryza glumaepatula Contact M.Lorieux, CIAT/IRD, Cali, Colombia

m.lorieux@cgiar.org
2
Rice A CSSL population of Oryza sativa x O. meridonalis Germplasm A Chromosome Segment Substitution Line working population of 32 BC3DH interspecific lines bearing introgressed genome segments from the AA genome of the wild species, Oryza meridionalis Available through IRRI rice genebank, Los Banos, The Philippines
Contact Ruaraidh Sackville Hamilton
r.hamilton@cgiar.org

For additional information contact
M. Lorieux, CIAT/IRD, Cali, Colombia
(read more)
2
Rice A CSSL population of Oryza sativa x O. glaberrima Germplasm A Chromosome Segment Substitution Line working population of 62 BC3DH interspecific lines bearing introgressed genome segments from the AA genome of the cultivated species, Oryza glaberrima, in a O. (read more) Available through IRRI rice genebank, Los Banos, The Philippines
Contact Ruaraidh Sackville Hamilton
r.hamilton@cgiar.org

For additional information contact
M. Lorieux, CIAT/IRD, Cali, Colombia
(read more)
2
Rice Interspecific rice lines (Oryza sativa x O. glaberrima) with drought tolerance Germplasm A set of interspecific, Oryza sativa x O. glaberrima, chromosome segment substitution lines identified with superior drought tolerance in Africa Contact B. Manneh, AfricaRice, Benin

b.manneh@cgiar.org
2

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